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How to Make Deposits in QuickBooks

October 6, 2025April 6, 2026

Estimated reading time: 11 minutes

Table of Contents
  • How to Make Deposits in QuickBooks
    • Step 1: Receive the Customer Payment
  • Understanding the Process
  • Undeposited Funds
    • Step 2: Record the deposit to your checking account
  • The Purpose the Undeposited Funds Account
  • Electronic / ACH Payments
  • The Default Setting in QuickBooks Desktop
  • How Income can be Doubled
  • Digging Deeper
  • Fixing Doubled Income
  • Summary
  • FAQ
    • How do I enter a deposit in QuickBooks?
    • Should Undeposited Funds have a balance?
    • What about EFT payments?
  • Support Links

QuickBooks has a two-step process for depositing customer payments. This process can seem confusing and cause problems. If your income looks too high, you might want to keep reading. This will help you learn how to make deposits in QuickBooks.

The basic process is the same for both QuickBooks Desktop and QuickBooks Online. This post will cover both.

How to Make Deposits in QuickBooks

Deposits are a two-step process in QuickBooks.

  1. Receive the Customer Payment
  2. Record the deposit to your checking account.

Step 1: Receive the Customer Payment

The first step is to receive the customer payment.

  • QuickBooks Online
  • QuickBooks Desktop

Select +New > Receive payment.

Select Deposit To “Undeposited Funds.”

image
  1. Select a Customer Name
  2. Enter the payment date, payment method, reference number and make sure undeposited funds is selected.
  3. Enter the amount of the payment
  4. Select the invoice or invoices being paid.

If you are using a desktop version of QuickBooks (Pro, Premier, or Enterprise), from the top menu, select Customers > Receive Payments.

image 7

You may also use the desktop icon.

image 6

You will then see the following window:

image 1
  1. Enter the customer name, payment amount, payment date and reference number
  2. Enter the payment type (check, credit card, etc.)
  3. Put a check mark next to the invoice or invoices being paid

Understanding the Process

Before you receive the customer payment (step 1), the customer has a balance in their account.

image 8

After you enter the payment, the customer balance will be reduced.

image 9

In accounting terms, a credit entry is made to the customer A/R account for the amount of the payment. But where does the cash go? What is the offsetting debit entry?

Undeposited Funds

QuickBooks makes the following entry when you receive a customer payment:

Account

Debit

Credit

Undeposited Funds

$2,500

Customer A/R Account

$2,500

When you receive a customer payment, the cash is not deposited directly into your checking account. That is completed in Step 2: Make Deposits.

Once you receive the customer payment in Step 1, the amount will appear in Undeposited Funds. This account is found on the balance sheet.

image 10

Step 2: Record the deposit to your checking account

The next step is to deposit the funds to your bank account.

  • QuickBooks Online
  • QuickBooks Desktop

If you are using QuickBooks Online, select +New > Bank deposit

Be sure to select the correct checking account and use the deposit date (which may be different than the check date used in Step 1).

image 21

Here is a summary of the 2 steps.

image 22

If you are using a desktop version of QuickBooks, from the top menu, select Banking > Make Deposits.

image 11

You can also follow the desktop workflow and select the Record Deposits icon.

image 12

In accounting terms, QuickBooks will move the money from the undeposited funds account to your checking account, both of which are found in the asset section of the balance sheet.

QuickBooks makes the following entry when you complete Step 2.

Account

Debit

Credit

Checking Account

$2,500

Undeposited Funds

$2,500

After step 1 (receive customer payment), your balance sheet looked like this:

image 14

After the deposit is made in step 2, the balance sheet will look like this:

image 13

The undeposited funds account has a zero balance, and the money is reflected in the bank checking balance.

The only balance in undeposited funds, should be the total of checks and electronic payments that you have not yet deposited.

The Purpose the Undeposited Funds Account

What is the purpose of the Undeposited Funds account? Here is an example.

We receive 3 customer checks, all on the same day. We take all 3 checks to the bank at the same time. The deposit amount of $2,750 is the total of all 3 checks.

image 16

The monthly bank statement will show a deposit on that day for a total of $2,750 as a one line item.

The purpose of the Undeposited Funds account is to group checks by deposit totals to make reconciling the account easier. Instead of having to research which customer checks are included in each deposit, the checking account will show deposit totals and can be easily matched to the bank statement.

Instead of seeing a separate line for each check, the check register will just show one line for the deposit total. This matches the bank statement and makes it a breeze to reconcile!

image 17

Electronic / ACH Payments

Please note that there should be a separate deposit for each electronic/ACH payment. Why? Each ACH payment will appear as a separate line on the bank statement.

The Default Setting in QuickBooks Desktop

By default, customer payments received will use the Undeposited Funds account.

This default setting can be changed. In single-user mode, from the top menu, select Edit > Preferences. When the Preferences window opens, follow these steps:

  1. On the left, select “Payments.”
  2. At the top, select “Company Preferences.”
  3. Unchecking this box “Use Undeposited Funds as a default deposit to account” will give you the option to use either checking or undeposited funds for payments received.
image 18

image 19

How Income can be Doubled

Some of you may be reading this because your income looks too high. How can this happen? Here is an example.

A customer is sent an invoice for $1,000.

image 23

We receive the payment for $1,000. This increases sales by $1,000 (credit) and increases undeposited funds by $1,000 (debit).

Our profit & loss statement will show income of $1,000 (both cash and accrual basis). That is the correct amount. We are good so far. Keep reading.

image 24

Since we have not completed step 2 (make deposits), the money is not yet showing in the checking account.

If step 2 is never completed, that is where trouble begins. The money is still sitting in Undeposited Funds.

When reconciling the bank account, if step 2 is not completed, you will not see the $1,000 deposit in the check register.

The trouble can occur when an additional entry is made for the $1,000. If an entry is made directly in the check register for the “missing” deposit, your income will now show as $2,000. I have seen the following entry made in many company books. This entry is incorrect and will double income. This register entry adds an additional $1,000 to sales, thus doubling income. Step 2 should have been completed to deposit the funds instead of creating an entry in the register.

image 25

Digging Deeper

After the incorrect entry, shown above, is made, the Profit & Loss shows income of $2,000. Income is doubled.

image 26

Where is the original $1,000 we correctly deposited in step 1? It is still in the Undeposited Funds account shown on the Balance Sheet.

image 27

Completing step 2 (make deposits) would have moved the $1,000 from Undeposited Funds to the checking account, leaving income as $1,000 and a zero balance in Undeposited Funds.

Here is what the reports should look like when both steps are completed correctly:

image 28
image 29

Fixing Doubled Income

In the above example, a journal entry could be entered to Sales (debit) and Undeposited Funds (credit) for $1,000. This entry will fix our financial reports in this simple example.

However, the scenario is often far more complicated. The corrections may cross multiple tax years, and there may be a mix of correct and incorrect deposits.

If you suspect a large number of incorrect entries or a large dollar amount, I highly suggest you contact your tax professional, a business consultant, or a QuickBooks ProAdvisor.

Summary

Deposits are a two-step process in QuickBooks.

  1. Receive the Customer Payment
  2. Record the deposit to your checking account.

If your income is overstated, there may be a mix of correct and incorrect entries, and it may involve multiple tax years. In addition, if you have been taking sales figures from QuickBooks and using Excel to calculate sales tax, sales commissions, forecasts, and other reports, you may want to contact your trusted tax advisor, business consultant, or QuickBooks ProAdvisor.

FAQ

How do I enter a deposit in QuickBooks?

Entering deposits in QuickBooks is a two-step process:
1. Receive the Customer Payment
2. Record the deposit to your checking account.

Should Undeposited Funds have a balance?

The balance should be the total of all checks and other payments received (in step 1) that have not been deposited (in step 2). If you have a large balance in undeposited funds, you may have an issue.

What about EFT payments?

Since these will show as an individual line item on your bank statement, a separate deposit is normally created for each EFT payment.

Support Links

Here are some great support links:

QuickBooks Online Deposits

QuickBooks Desktop Deposits

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About the Blogger

Tim Plue
Contact Me

I am an Advanced Certified QuickBooks ProAdvisor and certified in the new Intuit Enterprise Suite. I can help you use the many features of QuickBooks to analyze and grow your business.

I have taught QuickBooks and bookkeeping classes for over 12 years. I help small business owners run their businesses using QuickBooks. I can meet you on-site or remotely.

Let's see what QuickBooks can do for your business!


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